PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G08880.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 330aa    MW: 35333.1 Da    PI: 4.8107
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G08880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.4e-1993146456
                      -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      ++++t+eq+++Le+ Fe+ +r++  e++ eLA++lg+  rqV vWFqNrRa++k
  OGLUM09G08880.1  93 KRRLTAEQVRALERSFEEeKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWK 146
                      4579*************98**********************************9 PP
2HD-ZIP_I/II121.93.1e-3992182291
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      +krrl++eqv++LE+sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR+ktkqlE d+++L++a+d+l + +++L +++e+Lr+++
  OGLUM09G08880.1  92 RKRRLTAEQVRALERSFEEEKrKLEPERKSELARRLGIAPRQVAVWFQNRRARWKTKQLELDFDRLRAAHDELLAGRAALAADNESLRSQV 182
                      8*****************9999******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.55687148IPR001356Homeobox domain
SuperFamilySSF466896.88E-1788150IPR009057Homeodomain-like
SMARTSM003891.8E-1690152IPR001356Homeobox domain
CDDcd000861.17E-1692149No hitNo description
PfamPF000462.1E-1693146IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.6E-1997147IPR009057Homeodomain-like
PRINTSPR000313.6E-6119128IPR000047Helix-turn-helix motif
PROSITE patternPS000270123146IPR017970Homeobox, conserved site
PRINTSPR000313.6E-6128144IPR000047Helix-turn-helix motif
PfamPF021832.1E-11148190IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MDDYSGRLVF SSAGAAPPCS AAGAGGGQML LFGGHGGFVG GSPVMEEAEL RRRRRKRPFL  60
TTTHDELELQ MEDLVDELYG VDEQGSSSAA ARKRRLTAEQ VRALERSFEE EKRKLEPERK  120
SELARRLGIA PRQVAVWFQN RRARWKTKQL ELDFDRLRAA HDELLAGRAA LAADNESLRS  180
QVILLTEKLQ ANGKSPSPSP APAEQTAVPA APESAKSFQL EEGRRLYDAA GSTTTTTNGG  240
GGGVAMPAAR VAAARAASND SPESYFAGAR SPPSSSDDDC GGGSDDDYPS SSVLLPVDAV  300
LAGDAFEHAV AATVAADEEA PLNSWEWFWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14957LRRRRRKRP
25056RRRRRKR
3140148RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8378950.0CT837895.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA112M06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610704.10.0PREDICTED: homeobox-leucine zipper protein HOX25
SwissprotA3BYC11e-175HOX25_ORYSJ; Homeobox-leucine zipper protein HOX25
TrEMBLA0A0E0B2C80.0A0A0E0B2C8_9ORYZ; Uncharacterized protein
STRINGLOC_Os09g21180.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127562735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-29homeobox 1